PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026538
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 466aa    MW: 52570.3 Da    PI: 6.6197
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026538genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.6e-13277320654
                  HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                    +Er+RR+ri++++++Lr l+Pk +      K++ a+iL  Av+YI +L
  DCAR_026538 277 VLIERNRRQRIKDGLFTLRALVPKiS------KMDRASILGDAVDYIADL 320
                  579*********************66......***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.9E-2010158IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000837.97E-13270325No hitNo description
PROSITE profilePS5088815.218271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-15272337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-11276320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-14277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-14277336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MGALERVVEL LRPLVKNKEW DYCVIWKLGD DPSSFIKWVD CCCCGGAANG HATAKEESGE  60
DVQQHIFPIC KDIYFPHLAK TKACEALAKY PASMPLYSGI HGDVAISNTQ MWVTSNATAS  120
NPKPGGTQVI IPVVGGLIEL FSTKNVLKDQ KLVEYITAHY NMSLEHEIMT GHCNTNHIIK  180
ERSHDPFVNE CLSVMPMLQN EAPNFNIDGS PTGPTPLDCP KSTRDSSESW ELNSKSKLSK  240
KEETKANLMC SKRAFDRQDR PKSRQRTQME SYQSKNVLIE RNRRQRIKDG LFTLRALVPK  300
ISKMDRASIL GDAVDYIADL KQMIACFQTE LKELEEAEYS KTSPIKQSHE GLPNSEECQE  360
TEVQMEIIRI GKREFLLKFI HSRKQAGVLR LLEAIHCLGF QVVDINVTTC EGKVMNIFKM  420
EVNQEDIEPN ELKESLLAIW RSKSDVMHEE KSLSTVIHQE VQVGI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99292227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-29bHLH family protein